Tissue Section registration

There are two ways/templates to register Tissue Section. You can choose one to submit your tissue sections.

  • One is registered with sample name,

    You can register Tissue Section with sample name, which associated a tissue section to a sample.

  • The other one is registered with sample accession.

    You can also register Tissue Section with sample accession if you get the sample accession number, which is start with ‘STSA’.

In the Tissue section template, the green fields are mandatory, and the yellow fields are optional.

  • tissue section alias

    User-defined name for the tissue section. It is unique for each tissue section. It cannot be modified if submitted, because it only used for objects association in the database.

  • tissue section ID

    The tissue section ID is for public display as you want.

  • tissue type

    It need to choose from the following list:
    [‘fresh frozen (FF)’, ‘formalin fixed paraffin embedded (FFPE)’]

  • tissue freezing and embedding

    It need to choose from the following list:
    [‘’,’simultaneously’, ‘separately’]

  • section thickness

    It is restricted text. The value syntax is ‘{integer} {unit}’. The unit is usually ‘μm’.

  • RIN

    Numbers are allowed. Supporting up to 1 digits after the decimal point.

  • tissue score

    Numbers are allowed. Supporting up to 2 digits after the decimal point.

  • DV200

    It is restricted text. The value syntax is ‘{integer} {unit}’. The unit is usually ‘%’.

  • staining protocol

    It need to choose from the following list:
    [‘ssDNA staining’, ‘H&E Staining’, ‘IF Staining’,’not determined’, ‘not applicable’, ‘not collected’, ‘not provided’, ‘restricted access’, ‘missing’]

    For more detailed explanation for the fields, please refer to the standard below:

Important

  • The number of the Tissue Section filled in the template cannot be greater than 100, and the template file cannot be greater than 10MB.

  • tissue section alias cannot be modified. tissue section ID can be modified because it is for publication.

  • If need to modify Tissue Section, the assigned tissue section accession numbers can not be modified.